Bert, Tell me the make of your cycle.
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Thank you for what you are telling me here about the hydro unit. Would you be able to take one of those photos I posted and put some pointers and arrows to the parts you are naming ?  From the depth I was in this before when I replaced the top seal, can I get to the parts you are talking about ? I have access to a surface plate at a friends shop that I could use >>> putting some 600 wet/dry sand paper (finish with 1000 grit) on and lap the two parts in order to create a better fit. However, if this is a futile exercise I won't bother digging into it and just choose to use it as it is. [my initial hope was to look inside the unit and see obvious galling or wear marks that could be fixed either with lapping or new parts. ] 
This time around I am going after all the bearings and bushings in an attempt to remove all the unnecessary noise from the machine,  and the trans is part of that effort. 
- The PTO clutch assembly I took apart and installed new bearings in it.
 
- This unit does have an oil filter that was changed last year.
 
- I am running 20-50wt engine oil not tractor hydraulic fluid. Is that any concern ?
 
- This unit does not have an ID tag on it. Just a number stamped in the bottom of the casting.  Would I need to take the side cover plates off the hydro unit in order to get into the area where critical clearances are located?
 
 
Only if you can tell me where to get parts for my motorcycle 
On a serious note, if you have been in the auto trade for years I should not have to tell you about, , , , , , , ,
MAKE,  MODEL NUMBER  and Year.
Apart from seals which are std items the most common form of failure is scoring between one of the piston blocks and the base as there is no seal
Less common is wear between the pistons & block, again there is no seal.
A customer did take his to work & got the block & base lapped together but they need to be flat to 0.0001"
Some parts are available some are not as a lot of makers have gone out of business.
The other thing to remember is if there is no filler & drain your unit was made in a clean room and it intollerant to the tiniest amounts of the finest dust.
Ones with external oil filters and top up plugs are designed to tolerate much higher levels of crud in the oil.
They are all the same, close fitting pistons that run on a face cam on end in a cylinder with cross drilled holes so the piston both pumps & is the valve.
The other end of the cylinder hole goes over a plate with holes in it which controls the direction of the oil flow.
There is no seal between the two so wear eventually causes them to leak pressure thus you go nowhere.[/QUOTE]